A Data-Driven Approach to Sugarcane Breeding Programs with Agronomic Characteristics and Amino Acid Constituent Profiling.

Sugarcane (Saccharum spp. hybrids) and its processed products have supported local industries such as those in the Nansei Islands, Japan. To improve the sugarcane quality and productivity, breeders select better clones by evaluating agronomic characteristics, such as commercially recoverable sugar and cane yield. However, other constituents in sugarcane remain largely unutilized in sugarcane breeding programs. This study aims to establish a data-driven approach to analyze agronomic characteristics from breeding programs. This approach also determines a correlation between agronomic characteristics and free amino acid composition to make breeding programs more efficient. Sugarcane was sampled in clones in the later stage of breeding selection and cultivars from experimental fields on Tanegashima Island. Principal component analysis and hierarchical cluster analysis using agronomic characteristics revealed the diversity and variability of each sample, and the data-driven approach classified cultivars and clones into three groups based on yield type. A comparison of free amino acid constituents between these groups revealed significant differences in amino acids such as asparagine and glutamine. This approach dealing with a large volume of data on agronomic characteristics will be useful for assessing the characteristics of potential clones under selection and accelerating breeding programs.

Evaluation of Agronomic Characteristics, Disease Incidence, Yield Performance, and Aflatoxin Accumulation among Six Peanut Varieties (Arachis hypogea L.) Grown in Kenya.

Diseases contribute to attainment of less than 50% of the local groundnut potential yield in Kenya. This study aimed to evaluate the agronomic characteristics (flowering and germination), disease incidence, yield performance (biomass, harvest index, 100-pod, 100-seed, and total pod weight), and aflatoxin accumulation in six peanut varieties. A field experiment was conducted using four newly improved peanut varieties: CG9, CG7, CG12, and ICGV-SM 90704 (Nsinjiro), and two locally used varieties: Homabay local (control) and 12991, and in a randomized complete block design with three replications. The disease identification followed the International Crop Research Institute for the Semi-Arid Tropics (ICRISAT) rating scale and further isolation of fungal contaminants was conducted by a direct plating technique using potato dextrose agar. The aflatoxin levels in the peanuts were determined after harvesting using the ultrahigh performance liquid chromatography and fluorescence detection (UHPLC-FLD) technique. ICGV-SM 90704 showed the least average disease incidence of 1.31 ± 1.75%, (P < 0.05); the lowest total aflatoxin levels (1.82 ± 1.41 µg kg-1) with a range 0.00-0.85 µg kg-1 for total aflatoxins and a range 0.00-1.24 µg kg-1 for Aflatoxin B1. The locally used varieties (12991 and the control) revealed the highest disease incidence (5.41 ± 8.31% and 7.41 ± 1.88%), respectively. ICGV-SM 90704 was the best performing among all the six varieties with an average total pod weight (9.22 ± 1.19 kg), 100-pod weight (262.93 ± 10.8 g), and biomass of (27.21 ± 5.05 kg) per row. The 12991 variety and the control showed the least total pod weight (1.60 ± 0.28 and 1.50 ± 1.11 kg, respectively) (P = 0.0001). The newly improved varieties showed lower disease rates, low levels of aflatoxins, and higher yields than the locally used varieties.

Optimized gamma radiation produces physiological and morphological changes that improve seed yield in wheat.

To study the effect of gamma radiation on various morphological and agronomic characters of bread wheat (Triticum aestivum L.), seeds were subjected to different gamma radiation doses; and selected M5 and M6 generation lines were evaluated. The optimum doses to induce desirable changes in bread wheat were 100-200 Gy. Seed loss decreased while grain yield, yield components, fertile florets number, biological yield, plant height, harvest index and flag leaf area increased in all mutant lines. Shear strength increased in many lines. Selected mutant lines also showed reduced seed shattering that can greatly reduce seed loss at harvest. Some new phenotypic characters such as the appearance of bristles on the glume, important for drought tolerance, two spikelets at each rachis and more fertile florets at each spikelet. These can greatly increase yield, as seen in some mutant lines. Also, some physiological characteristics including photosynthetic rate, stomatal conductance, water use efficiency, and chlorophyll content improved in some mutant lines. About 95.8% of the total variation in grain yield was explained by three selected variables: flag leaf area, number of seeds per spike, and spike number per plant. Grain yield increased more than 45% in some mutant lines the highest ever reported using this approach to the genetic improvement of wheat. Wheat grain yield has increased 2.2 times in the last 50 years, which indicates that if mutagens are optimally used and the selection is carefully performed as described herein, it is possible to improve important economic traits, in a much shorter time. Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-022-01225-0.

Effect of Colonization of Trichoderma harzianum on Growth Development and CBD Content of Hemp (Cannabis sativa L.).

Trichoderma harzianum, as a natural endophytic biocontrol agent, can ameliorate plant development, nutrient uptake, and resistance to biotic and abiotic stresses. This study aimed to investigate the effect of Trichoderma harzianum inoculation on agronomical and quality characteristics of two monoecious hemp (Cannabis sativa L.) varieties, Fedora 17 and Felina. A greenhouse pot experiment was conducted in a completely randomized design of two treatments of Trichoderma harzianum with a low and high dose of the fungus (T1 and T2). The significance of differences between treatments was estimated by using a Fisher's test with a significance level p = 0.05. The root density of both varieties was significantly affected by treatments, and higher values were recorded in Fedora 17 (2.32 mm cm-3). The Arbuscular Mycorrhizal Fungi (AMF) colonization of the root system and the soil emission of CO2 were higher after the inoculation of Trichoderma harzianum. The highest values of plant height and dry weight were noticed for T2, especially in variety Felina. Trichoderma harzianum positively influenced characteristics of inflorescences such as their number, fresh weight moisture, and compactness in both varieties, while the dry weight, length, and dry yield of inflorescences were not improved. Finally, the fertigation of Trichoderma harzianum in hemp plants was beneficial by increasing the cannabidiol (CBD) content, especially in T2 treatment (4 × 1012 CFU kg-1).

Genotypic differences relative photochemical activity, inorganic and organic solutes and yield performance in clones of the forage cactus under semi-arid environment.

Plants with the crassulacean acid metabolism commonly present good adaptation to arid and semi-arid environments, but it highly depends on the type of species. In this study, chlorophyll fluorescence, the concentration of inorganic and organic solutes and the productive performance were evaluated along with their relationships in different clones of the genera Opuntia and Nopalea. The experiment was conducted from 2016 to 2018. Four clones of genus Opuntia were evaluated: 'Orelha de Elefante Mexicana' (OEM), 'Orelha de Elefante Africana' (OEA), V19 and F8; and two clones of genus Nopalea: 'IPA Sertânia' and 'Miúda'. The experiment was arranged in a randomised block design, with six treatments and three replications. The following parameters were measured when harvesting: initial, maximum and variable fluorescence; the quantum yield of PSII (Fv/Fm); light-induction curves of the photochemical parameters (ΔF/Fm', qP, NPQ and ETR); the chlorophyll and carotenoid content; carbohydrates; the sodium (Na+) and potassium (K+) content; morphometry; and dry matter accumulation. The values for the effective quantum yield of PSII (ΔF/Fm') and the alterations in photochemical quenching were higher in the OEM clone (P < 0.05). There was a difference between clones for non-photochemical quenching, with the F8 clone having the highest values. The Fv/Fm was 0.87 for the OEM. 'IPA Sertânia' obtained the greatest Chl a/b, and the highest values for carbohydrate concentration were found in the OEA clone. The OEM clone showed the greatest accumulation of K+, in addition to a higher cladode area index and greater dry matter accumulation. The results of this study show the high physiological tolerance of the forage cactus to a semi-arid environment, which varies according to the clone.

Physiological Characteristics of Cultivated Tepary Bean (Phaseolus acutifolius A. Gray) and Its Wild Relatives Grown at High Temperature and Acid Soil Stress Conditions in the Amazon Region of Colombia.

Common bean (Phaseolus vulgaris L.) is sensitive to different types of abiotic stresses (drought, high temperature, low soil fertility, and acid soil), and this may limit its adaptation and consequently to its yield under stress. Because of this, a sister species, tepary bean (Phaseolus acutifolius A. Gray), has recently gained attention in breeding for improved abiotic stress tolerance in common bean. In this study, we evaluated the adaptation of 302 accessions of tepary bean (Phaseolus acutifolius A. Gray) and its wild relatives (grouped in four types of tepary bean genetic resource: cultivated, acutifolius regressive, acutifolius wild, tenuifolius wild) when grown under high temperature and acid soil conditions with aluminum toxicity in the Amazon region of Colombia. Our objective was to determine differences among four types of tepary bean genetic resource in their morpho-phenological, agronomic, and physiological responses to combined high temperature and acid soil stress conditions. We found that cultivated P. acutifolius var acutifolius presented a greater number of pods per plant, as well as larger seeds and a greater number of seeds per pod. Some traits, such as root biomass, days to flowering and physiological maturity, specific leaf area, and stomatal density, showed significant differences between types of tepary bean genetic resource, probably contributing to difference in adaptation to combined stress conditions of high temperature and acid soil conditions. The photochemical quenching (qP) was higher in cultivated P. acutifolius var. acutifolius, while energy dissipation by non-photochemical quenching (NPQ) in the form of heat and the coefficient of non-photochemical dissipation (qN) were higher in acutifolius regressive and tenuifolius wild accessions. We have identified 6 accessions of cultivated and 19 accessions of tenuifolius wild that exhibited grain yields above 1800 kg ha-1. These accessions could be suitable to use as parents to improve dry seed production of tepary bean under combined stress conditions of high temperature and acid soil.

Important agronomic characteristics of yielding ability in common buckwheat; ecotype and ecological differentiation, preharvest sprouting resistance, shattering resistance, and lodging resistance.

Common buckwheat is recognized as a healthy food because its seed contains large amounts of protein, minerals, and rutin. However, the yielding ability of common buckwheat is lower than that of other major crops. The short growing period, moisture injury, occurrence of sterile seeds due to lack of flower-visiting insects, and yield loss due to lodging and shattering cause low and unstable grain yield. Therefore, many common buckwheat breeders have tried to increase yielding ability by improving various characteristics. Recently, new breeding objectives for improving yielding ability by increasing preharvest sprouting resistance; reducing shattering loss; introducing self-compatibility; the ecotype, and semidwarf have been reported. In this review, we introduce the research on the important agronomic characteristics, preharvest sprouting resistance, ecotype and ecological differentiation, shattering resistance, and lodging resistance in common buckwheat.

Agronomic and environmental factors affecting cultivation of the winter mushroom or Enokitake: achievements and prospects.

The global interest in production of the winter mushroom or Enokitake (Flammulina filiformis previously known as Flammulina velutipes) is increasing owing to its nutritional and medicinally important bioactive compounds along with a marketable texture and flavor. This review presents the state of knowledge on achievements in solid-state cultivation and submerged cultures of Enokitake and how they are influenced by environmental factors and agronomic characteristics. A wide range of basic lignocellulosic substrates and supplementations have been reviewed in order to formulate an efficient and locally available substrate. Domestication of wild types of Enokitake and its economic and research implications are also discussed. Besides, the influence of environmental and agronomic factors on production and efficacy of the most important biologically active metabolites of Enokitake in both solid-state cultivation and submerged cultures has been discussed. Some of shortcomings of studies reporting cultivation of Enokitake are described and their contribution to future prospects is also discussed in this review.

Agronomic performance of insect-protected and herbicide-tolerant MON 89034 × TC1507 × NK603 × DAS-40278-9 corn is equivalent to that of conventional corn.

Agronomic characteristics of genetically modified (GM) MON 89034 × TC1507 × NK603 × DAS-40278-9 (PowerCore™ Enlist™), MON 89034 × TC1507 × NK603 (PowerCore™), and DAS-40278-9 (Enlist™) corn, a non-GM near-isogenic hybrid, and 2 commercial non-GM hybrids were assessed in a field study to determine if the agronomic performance of the GM corn hybrids is equivalent to that of non-transgenic hybrid corn. The MON 89034 × TC1507 × NK603 × DAS-40278-9 hybrid corn was developed through stacking of 4 individual transgenic events, MON 89034, TC1507, NK603, and DAS-40278-9 by traditional breeding and contains the cry1A.105 and cry2Ab2 (MON 89034), cry1F and pat (TC1507), cp4 epsps (NK603) and aad-1 (DAS-40278-9) transgenes. These transgenes encode the proteins Cry1A.105, Cry2Ab2, and Cry1F, which confer insect resistance, PAT, CP4 EPSPS, and AAD-1, which confer herbicide tolerance. The following agronomic characteristics were assessed in the study: initial and final stand count, seedling vigor, time to silk, time to pollen shed, pollen viability, plant height, ear height, stalk lodging, root lodging, days to maturity, stay green, disease incidence, insect damage, herbicide injury, and yield. The agronomic assessment was conducted in 2 regions of Brazil (Indianopolis-MG; Cravinhos-SP). The agronomic attributes for all GM entries were statistically indistinguishable from the non-GM near-isogenic hybrid. In addition, most of the agronomic assessments fell within the range of the commercial varieties included in the study. Taken together, MON 89034 × TC1507 × NK603 × DAS-40278, MON 89034 × TC1507 × NK603, and DAS-40278-9 were found to be agronomically equivalent to non-GM corn.

Performance of sunflower cultivars at different seeding periods in central Brazil / Desempenho de cultivares de girassol em diferentes épocas de semeadura no Brasil central

ABSTRACT Sunflower (Helianthus annuus L.) is a very important crop for Brazil, and especially for Chapada do Parecis which is the largest domestic producer, because of its climate and soil conditions are adequate to the development of the specie. The performance of cultivars and sunflower seed sowing periods were evaluated in Central Brazil. Experimental design comprised an 8 x 5 factorial randomized complete block, with eight sunflower cultivars (Aguará 06, Aguará 04, MG 305, CF 101, SYN 3950HO, SYN 045, GNZ NEON and HELIO 251) and five decennial seeding periods, with three replicates. Analysis of variance and Scott-Knott´s test (p<0.05) were applied. Cultivars GNZ NEON and SYN 045 provide the highest production rates in achenes, with higher value in favor of GNZ NEON. SYN 3950HO (this with higher value), CF101, MG 305, SYN 045 and Aguará 04 gets the highest oil rates in the achenes, with SYN 045, GNZ NEON, Aguará 04, CF101 and SYN 3950HO with the highest oil production. The first seed sowing period is the most productive and the first and fifth periods have the best results for oil productivity. Cultivar GNZ NEON and the first period exceede the others with regard to vegetative and reproductive variables.

RESUMO O girassol (Helianthus annuus L.) é uma cultura de grande importância para o Brasil, e especialmente para Chapada do Parecis, que é o maior produtor nacional, em virtude das suas condições edafoclimáticas serem propicias ao desenvolvimento da espécie. Objetivou-se avaliar o desempenho de cultivares e épocas de semeadura do girassol no Brasil Central. O delineamento experimental utilizado foi o de blocos casualizados, em esquema fatorial 8 x 5, sendo oito cultivares de girassol (Aguará 06, Aguará 04, MG 305, CF 101, SYN 3950HO, SYN 045, NEON e HELIO 251) e cinco épocas decendiais de semeadura, com três repetições. Aplicou-se análise de variância e teste Scott-Knott (p<0,05). As cultivares GNZ NEON e SYN 045 proporcionaram maiores produtividades de aquênios, com valor superior em favor da GNZ NEON. A SYN 3950HO (esta com valor superior), CF101, MG 305, SYN 045 e Aguará 04, obtiveram os maiores teores de óleo nos aquênios. A 1ª época de semeadura foi a mais produtiva, assim como a 1ª e a 5ª épocas apresentaram os melhores resultados para produtividade de óleo. A cultivar GNZ NEON e a 1ª época foram as que se destacaram das demais, tanto para as variáveis vegetativas como para as reprodutivas.

Efeito de anos e épocas de semeadura sobre o desempenho agronômico e rendimento de cultivares de trigo em Palotina, PR / Effect of sowing dates and years on agronomic performance and yield of wheat cultivars in Palotina, state of Parana, Brazil

O objetivo do trabalho foi avaliar o desempenho agronômico e rendimento de grãos de cultivares de trigo em função de anos e épocas de semeadura. Os experimentos de campo foram instalados na Fazenda Experimental da Cooperativa Central de Pesquisa Agrícola (Coodetec), em Palotina, Estado do PR, Brasil, durante os anos agrícolas de 2006 e 2007. O delineamento utilizado foi em blocos completos com os tratamentos ao acaso, com quatro repetições. Foram avaliadas seis cultivares de trigo (CD 104, CD 105, CD 108, CD 110, CD 111 e CD 114), e cinco épocas de semeadura (22/03, 07/04, 20/04, 04/05 e 18/05). Realizou-se a análise estatística conjunta para anos, cultivares e épocas de semeadura, em todas as combinações. As características avaliadas foram: ciclo até o espigamento e até a maturação, e rendimento de grãos. A maturação foi a característica mais afetada durante os dois anos avaliados. De maneira geral, em ambos os anos, o maior rendimento de grãos, para as seis cultivares de trigo, foi obtido em semeaduras realizadas no mês de abril.

The objective of this work was to evaluate the agronomic performance and yield of wheat cultivars in response to different sowing dates and years. Field experiments were carried out on the Experimental Farm of the Central Cooperative Unit in Agricultural Research (Coodetec) in Palotina, state of Paraná, Brazil, during the agricultural years of 2006 and 2007. There was used the randomized block design with four replications. There were evaluated six wheat cultivars (CD 104, CD 105, CD 108, CD 110, CD 111 and CD 114), and five sowing dates (03/22, 04/07, 04/20, 05/04 and 05/18). The statistical analysis was carried out jointly for the years, cultivars, and sowing dates, in all combinations. Days until both emergency to flowering and emergency to maturation, and yield grain, were evaluated. Maturation was the characteristic more affected during the two years of study. In general, for both years, the highest grain yield, for the six wheat cultivars, was obtained in April sowing dates.

Índice de cobertura vegetal e sua modelagem para cultivares de soja no sul de Minas Gerais / Index of vegetal cover and its modeling for soybean cultivars in the south of Minas Gerais

A cobertura vegetal do solo é decisiva para redução dos efeitos erosivos do impacto direto das gotas de chuva na superfície do solo. Desta forma, objetivou-se com este estudo determinar o índice de cobertura vegetal (CV) e desenvolver modelos para sua estimativa para a cultura da soja, usando os atributos climáticos no período de chuvas intensas no Sul de Minas Gerais. As determinações da CV foram feitas semanalmente, na área experimental do Departamento de Ciência do Solo, Universidade Federal de Lavras, no período de novembro de 1999 a maio de 2000, em 28 cultivares de soja com potencial para cultivo nesta região. Para avaliação da cobertura vegetal foi utilizada a metodologia descrita por Stocking (1988). Na modelagem procurou-se relacionar a CV com os valores acumulados dos seguintes atributos climáticos: temperatura média (Tmed), precipitação (PREC) e umidade relativa do ar (UR). Os valores de cobertura vegetal apresentaram uma amplitude de variação de 56 a 83 por cento, sendo BR 162, LO 12 L e M. Soy 108 as cultivares mais eficientes e FT Abyara e Tucano as menos eficientes. O hábito diferencial de crescimento das cultivares ajuda a explicar esse comportamento. O modelo ajustado adequado para estimativa da CV foi: CV = 116589,976 + 0,422 . Tmed + 0,132 . PREC - 0,095 . UR + 0,000024 . Tmed², R² = 0,99 (P < 0,01). A determinação da CV nas diferentes fases de desenvolvimento da cultura é de grande importância, uma vez que seu estabelecimento coincide com o período de maior potencial erosivo das chuvas na região estudada.

Vegetal cover of soil is decisive to reduce the erosive effects of direct impact of raindrops on the soil surface. Therefore, the objective of this study was to determine the vegetal cover (CC) index and to develop models to estimate it for soybean cultivars, using climatic attributes in the period of intense rains in the South of the State of Minas Gerais in Brazil. CC was measured weekly in the experimental area of the Department of Soil Science, Federal University of Lavras, from November 1999 to May 2000, for 28 soybean cultivars with yield potential in this region. To evaluate the vegetal cover, the method described by Stocking (1988) was used. In the modeling, CC was related with the accumulated values of following climatic attributes: medium temperature (Tmed), precipitation (PREC), and relative humidity of the air (RH). Vegetal cover values presented an amplitude from 56 to 83 percent, being BR 162, LO 12 L and M. Soy 108, the more efficient cultivars, and the FT Abyara and Tucano, the least efficient ones. The differential growth habit of the cultivars helps to explain this behavior. The best adjusted model for the estimative of CC was: CC = 116589.976 + 0.422, Tmed + 0.132, PREC - 0.095, RH + 0.000024 Tmed², R² = 0.99 (P < 0.01). The knowledge of CC for different development phases of the crop is of great importance, taking into account that its establishment time coincides with the highest erosive potential of the rains in the studied region.